The Super Manga has its own version of Battle of Gods that's separate from the movie and TV show.
It's not that I'm saying the manga is wrong in particular, just that the anime is more in line with what Toriyama said in a specific interview and what he wrote in the latest movie. I won't take the F manga into consideration because it's technically not part of the Super manga and may or may not be part of the same continuity.
All we really know is that the Resurrection F story did happen in the manga continuity, it was skipped over and the reader would be reading the manga in mind that what happened in the Resurrection F movie is what was skipped over because nobody would be assuming that it was radically different. So if the events of the movie played out the same as they did in the manga then this latest chapter does not fit with the movie because Goku is supposed to be as strong as Super Saiyan God in base whereas in the manga Super Saiyan God is even more powerful than Super Saiyan (which also contradicts the previous movie).
The anime version of the Champa arc fits better with the movie or simply with what Toriyama wrote and said except for arguably a couple things.
And honestly, Toriyama contradicted himself in recent interviews. First blue was a weak color then he went with it, first he said Goku and Vegeta wouldn't use anything but Base and SSJ1 then he goes and makes a new form,... So really, the man barely has a clue what he wants what to do and how it works anymore.
That's true but it's not really the same thing. He might have said it looked weaker but he might still think that even though he went with it anyway, it's true it really does look weaker and this
"Super Saiyan 2 and 3 are nothing more than powered-up variations of Super Saiyan. After the fight with Beerus, Goku realized that mastering his normal state and Super Saiyan would raise his level more and sap less strength, so I think he probably won’t become Super Saiyan 2 or 3 any more."
Is still true because he hasn't become a Super Saiyan 2 or 3 since. He didn't say that they couldn't get stronger by obtaining a new form.
The Resurrection F movie did not contradict what he said in that interview because he didn't turn into a Super Saiyan God in it and he had apparently made that power his own which was why he could fight Frieza.